Scaffold Ga0187877_1025311

Overview

Basic Information

• Taxon OID: 3300017931
• Scaffold ID: Ga0187877_1025311
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3085
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011543	Metagenome / Metatranscriptome	290	Y
F059472	Metagenome / Metatranscriptome	134	Y
F073775	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187877_10253113	F073775	AGGAG	MYSLISRLDQKHRRLFQIANVALVLGLVPWVFREYVTVNHDWLDAWCGFFLGLSVTINLACLRAARRCPRTQA
Ga0187877_10253114	F011543	AGGA	MLTFDSRSLKKNLPILIALLLVAQVDLASAFGWPQSLLSLLHLTAANNDLCSGVCAGLGTSIDVLVIFQLVRMWAKRALLASRDTQHD
Ga0187877_10253115	F059472	GGAG	MTHPILNRILMLDQVADERSREHQRRSTSAAAIIGTLIAFVMLEYQLLVEHHVPWDLIAVIYAMGLTKIALVRWYRYRN