Scaffold Ga0187849_1035161

Overview

Basic Information

• Taxon OID: 3300017929
• Scaffold ID: Ga0187849_1035161
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2509
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074286	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_10351612	F074286	GAGG	VTENGTETVINKLAVAVLAGLLESVTSTVKLEMLEVLGVPVIVPLEALRLSPAGSEPEISAQV
Ga0187849_10351613	F074286	AGGAG	VPDGKEVVVTEKPGGETVMDRLAEAVLAGMLESVTVTVKLEVPELVGVPVIAPLEALRLSPAGSEPLVSDQV
Ga0187849_10351614	F074286	AGGAG	VPDGREVVVTESGATETVIDRLAEAVLAGLLESVTVTVKLEVPEVLGLPVIAPLEAPRLSPAGSDPEVIAQV
Ga0187849_10351615	F074286	N/A	VEVAVLAGLLESITSTVKLEMPEVLGVPVIAPLEALRLSPAGSEPLMSAQV