Scaffold Ga0187849_1018321

Overview

Basic Information

• Taxon OID: 3300017929
• Scaffold ID: Ga0187849_1018321
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4057
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F093116	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_10183211	F093116	N/A	SRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFQGQGRIPRHRLAIYNEPIPVTTAMDIAREEWVELFKKARKYADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKAEFLKAGKDHRDKRVTNEQEAGLAAYLFAEEDVHNRIEASGMYLEIYAELVKLVFDRELTLEPPRNPDGAVKPVADGILGGPHTLDGFLDMARAAGVTRKYVPISWESDRVRADYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLVATEDDTEAPPQVTTVALPAVNGFEQRLRDIALKQEDRQKIEAELKLFQAQVGQRVTVKPVTYHNPKTCQDEPAAEVFLEGKSEPLCWISREQVSTVTRELTGILVSNGKYSLKALCPLPEQGAQS
Ga0187849_10183214	F004817	AGGA	MPKTIAVVQLPEILGSGSSHLVKLAGKIDSFSLLLRQTPEGELKRSIEVQFHSMVFATRKEIRKYCPRYHYLPGEGILDFSTDCASAQLEPGDFGQAPPPKRGRLCEKCCFFAGIPEEQLPETTVSAAPQDLVLVA
Ga0187849_10183215	F003859	GGAG	MDEQNPEKDTSLERSSSPGSSWPGASLYKSLKLGWHWRRLRWAVVAASEAAQGHEANGLPPGSREFKTLFDEVVRKVQEYSTEYGDPLDTLKARLPALCALERLAYPAPTVPRNKAGLTLGILIAALLGSIGMGALIGLGTGMAHWIAHLFA
Ga0187849_10183216	F016632	AGGAGG	VTGILELFALFEVGSGIGFLASWRNKVLKAKVNFFRQPNNKSSPFDKALRGKVGRAVTRQDRLRLQLADGLVNLIRKLVQYEAFRQLVRGLALAHSPMRQALRKKGGRPW
Ga0187849_10183218	F025427	AGGAG	MQPGEMEELLVSLETCPIQKKGLVWRLLKLYWKRLLFIVLMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETYKKWKEEHDIH