Scaffold Ga0187849

Basic Information
Taxon OID	3300017929 Open in IMG/M
Scaffold ID	Ga0187849_1009552 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6638
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6638

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_100955211	F016632	AGGAGG	VTGILELFALVETGSAIGFLASWRNKVLNAKVNFFRQRNNRPSPFDKVLRGKVGRPVTKQDRLRLQLADRLVNLIRKLVQYGAFRQVVRGLALAHSPMREALRKKGGRPW
Ga0187849_100955212	F003859	AGGAG	MDEPNAEKRTSLECTSIPGRSWPGASLYKSLKLGWHWRRLRWAVVAASEAAQGHEANGLPPGSREFKTLFNEVVRKVQEYSTESGDPLDTLKARLPALCALERLACPAPTVPRNKARLTFGILIAALLGSLGMGALIGLGTGMAHWIAHLFA
Ga0187849_10095526	F005112	AGGAG	MSLVTRYRLFWAALVAALLGLAFWKNSRSYPRKSRLWRLGKAVIDTGLVVLMVIYTPALLLMYVVIWLTSPFRNKVIQVSAAFASILAITHLAGVVFEAVAVLGVFAVDLLSGQVVARIDRRERNKLAKAA
Ga0187849_10095527	F007120	AGGAGG	MKTLIIVLSAACAVVAYYFGLRYFSGRDLGFTPPRKYVQSLAKNLLHTELTAAREAGTTPEATTEQAA
Ga0187849_10095528	F002761	AGGTGG	MVFTPSSTGSFTAGAVFWSMVWAGLGKLNELARFVGFKRSKPRESASRWINSHKVITLTATEVVNYSVHGITSPLGVTFALGGTLVNLLMVTFIVPIWCRLSNLESH
Ga0187849_10095529	F025427	AGGAG	MQPGEMGELLVSLETCPIQKKGLFWRLLKLYWKKLSFVVLMLILPGGLWILGLCAVVWALNWGGEMQAYQEEQYRRWKEEHGIHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187849_1009552

Overview

Ecosystem & Geography

Associated Families

Sequences