Scaffold Ga0187849_1007907

Overview

Basic Information

• Taxon OID: 3300017929
• Scaffold ID: Ga0187849_1007907
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7665
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022139	Metagenome / Metatranscriptome	215	Y
F027097	Metagenome / Metatranscriptome	195	Y
F038963	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_10079075	F038963	AGG	MVNSPKERPPRTSKAEARVSEMARREADRQARRIPWQRLLEARQQYVEWNAFGLWARAIAEVEGHVPAWLEKVLEERCPGILGSDHISETAHRHTPLNRRILEWAESNALTQAKDEGWLQAITFYAVRDPAFARDCAYSQHCQAQWKRQRPSAYPSVEEWRRASEQCANEILDAFEMAEDNRKIIKVSRRVGPERIAAAVVQYMEWEAFTYWLRSLLESDAKFPDAVAHELQRRCPGFLERDEVLCSALAPENYTKRWKALLEWGENRFFNHIRKEGWFEAVVSEARAHPRSVRTVDYWVFYWDAHWSSQPLETYPSFDEWRSAADGFVVITTGEQATAV
Ga0187849_10079076	F022139	AGG	MRGQGYRNEGHRLRGITAVKDFNRDLVDWTPELDAILREGYARGWDGAREAINKIQTLHPKWRSYIIWKRAKELGLNQKNVQERPPWSDADDALLRDFAQELSVKAIGRLLHRSERSVRWRFARLGESCKVRDNYSQEELARDLRVSPKTVRRWEEAGYLERRDGRITHESLEEFCRKHASEINYAALDREMQRWLREDVGFVPAQTQPKNGNGILRHLEKIGVCTWCGRKTRGNAHGRHVEACARKNGSKKGLQASGSQTAVACSPVVITTKPSAALRHSSNEG
Ga0187849_10079077	F027097	AGG	MPDDFKSAPPVWIWPSGSATAVEPDVLDVARRNWLRVLSYARSHGEDSSVAANIFESVLLATSRIRRSSEKSRNAIRNIDAYVYVGFVRKFNRYLAKQPKIQFVGSLHDVHTLHDIRTSRGAPTAEDELLTKELLQQMSQRTRRTFYLRANGYSWKETGQLLKTTANSAQVLFNKEIGKLRSRVWKTKASEQRPGGEVDE