Scaffold Ga0187806_1032062

Overview

Basic Information

• Taxon OID: 3300017928
• Scaffold ID: Ga0187806_1032062
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1559
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F001851	Metagenome / Metatranscriptome	626	Y
F005065	Metagenome / Metatranscriptome	413	Y
F013120	Metagenome / Metatranscriptome	274	Y
F018222	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187806_10320621	F005065	AGG	MMILMMDANYISERLGSMRQEISDLRVTTARYWSKDQHTALEKSAFALRKGRLLEIKREVSDMMKRCA
Ga0187806_10320622	F018222	AGCAG	MSPDPRKTWQYFAQAVIQEEDPEKLTYLMQQLYRVLKDNEEQPMRTF
Ga0187806_10320623	F013120	GGAGG	MEYFRFDHPPDRLILCHRSNCEDIADYLEINEQGREDLVCAAHTTSERHASVLPKGVPRVERHRSRTAA
Ga0187806_10320624	F000042	AGAAGG	VKNTKFVVKLNRGGIRAPEFVQRIDRTPIQMTTNRKLALVMGKFMAEDTIKSLQNSRRIPELISVQVEYGQLSA
Ga0187806_10320625	F001851	AGGAG	MNLTSFSFGLLIVLFTILLLHKMHKLKPRIAGYGSQRMCPSCGLITSRLKPCCLECGKSLTSVSVTPILEK