Scaffold Ga0187824_10003159

Overview

Basic Information

• Taxon OID: 3300017927
• Scaffold ID: Ga0187824_10003159
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4443
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003435	Metagenome / Metatranscriptome	487	Y
F045975	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187824_100031592	F045975	GAGG	VQGRGIALPLDSSCAVGFIRLVQVRARDPLAAELRAIEQVGSDWATSVYAISNRGAAPSLTITQVGLLSWWHRFLGAPRGYIFFTEEGFQLHPGPQPGQS
Ga0187824_100031595	F003435	GGAG	MRLTPEIPVLRRWRSWAVAVLIAEISWFALLRPRTSAPGTLFVLALLPLAVVGYVYLMVAVSAYLADRRWDFRLRQMIVLMLGLSVGCFVFSLLWVAKVHFENEIG