Scaffold Ga0187856_1007453

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1007453
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6723
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000323	Metagenome / Metatranscriptome	1300	Y
F003754	Metagenome / Metatranscriptome	470	Y
F064183	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_10074534	F003754	GGA	MIVDVTKPEKPSLLKRTAESNQSTTGNLQMLTPDVAIAEAPEKTPTTLTSSNRPTETVRVLDLSDPRNPKTLETFNKVTSLLPDGGHGLIYLTNNEGLWILRYNRPLRLEPAKKKPPCDSESAIMAMPPDCD
Ga0187856_10074535	F000323	GGAG	MKKLWFALLLSGSFLLAQNSSPSPHKSKDSKGEVTIQGCVSRFSGDYILTKQDPGMTYELQATGKIKLRKYLGQRVEVTGTESPSMMTSSDAMTKVGAPSSVTLTITSIKTIERECSVR
Ga0187856_10074537	F064183	N/A	WIYLRIKSTDSARAATLSNLLNWIYTDGQQFAVQEGYAELPPPLLEALRKKVKDLQ