Scaffold Ga0187856

Basic Information
Taxon OID	3300017925 Open in IMG/M
Scaffold ID	Ga0187856_1006676 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7213
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7213

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F010114	Metagenome / Metatranscriptome	308	Y
F029198	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100667610	F029198	GAGG	MDSKPNSGPVRVHGEVIVLHCWACGTAHYVNQELCVPGELSHMVCSNSNCGMSMFLVNELVLDDKTRKQMTKSELNARVTYSRFWK
Ga0187856_100667612	F004823	AGGAG	MYATKEVNGVPAIQRDGQSVLSVCDQDWEFANWLCALLNELGRKSELLLNEQDWEWLNAIDRPFRRTAQHA
Ga0187856_10066763	F010114	GAGG	MIIELNDDDTRLLYVVLLEQAQEHLSYADTSEVAERLYKLATRFERPVRELPNVTIA
Ga0187856_10066764	F001596	AGGAG	MSWFHSSTAPVDARNHASSAEVVACFQDQRNVLGRLAFLITGDQATADQAVVQACEITLQGNSPFRNWLLEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAPSLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAMTWLHDGHVKPVEENYDASHAV
Ga0187856_10066765	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTELSYIDSVGEQLLKWLASVGALFVAGSVYASAVCDRLRLSPMQRTAERRKRRHGSNGERSSIKHSHPVEAI
Ga0187856_10066768	F006399	AGG	MATPALNSQVQSLVAEYSVFWQFWPQFEQIHGERRLVGFELELIGSHTSDLNHLDPACPACRHVRSVLLAIALAMPRETSFRRNYLTYNIDSHSNSILCLPALGNRSAVSVSIYVVWNRSDGQSFETDLLSEIKAFLNGWGIHQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187856_1006676

Overview

Ecosystem & Geography

Associated Families

Sequences