Scaffold Ga0187856_1001636

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1001636
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17547
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y
F042698	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100163610	F016487	GAG	VIQGNQTWQLALAQPQKQAYYTVEIPDFAIAIASFTASAQAATMLSGYGVTLYGIGLYGT
Ga0187856_100163613	F007097	AGGAG	MSQLILSAIPGFFDLDDSAIAAGQPLTDDSMLKISHNAKFGAVRSKLVFMGFYANGNTVPTPIDPDDGYAYSRAECQFVWMIYSNRAPAPGFVPGQASPPGQSSAQPGSLYNFPGGWDINDATGVVTLRTTYWQNGSEVVNNDGILKVYAACLRLSLSSAN
Ga0187856_100163616	F021037	AGGAGG	MYHLRAPSLYVAIAICLASCAWSSISEARVAQTLRAGQANPFTVEGKVNTLDQNKLTLNTEENMIFHVRYDDKTEFKSEDGSSASSKDLRVGLRIRVEGDLTESGEIVAQRIELLKTPPK
Ga0187856_10016362	F042698	GGAGG	MSIAVSTANQDLVVDNRGYLPALATLDVTGMTAAATNTVPHGLPRIPRRVWFTGIASGANAAACSLDTSSVAAGFDATNIYIFTPAGVTSVLVHVEY
Ga0187856_10016363	F011724	N/A	MSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDRKARIRGAFLARLIDPDTLALTVDAGNFLRALNRDGAIADLGDALQGDVTLQPGEYSLAGSHRQSFERQIEEIKEGLYDALFSGLARHVEIEPLLGGIAGGETDRSTALDRGEDKAFSKNQVF
Ga0187856_10016364	F008672	GGA	MAWISYYNAGLSKQVVRQLLAVVNRDIQAALDFVSGVPGSYAPFAEYDLALLPVQQFPAILLTPDTVTFDEEANCTLHQTMRLSCVIAVTHQDRNTLAEMTQDYTRAVRAVLDTLWESTPGDFLLANLPLPSPPFPNGALSPGLASGKLMKIFAEGHTFEEIRRRPQSGFAMAATMSIIVEVEET
Ga0187856_10016366	F010661	AGG	MSKSNSIATAADFRKLAEASAFVEPQRVLLPKSGFGVVLRRPTKFYWALRRTGWPCELREKLDLVGVGVKPELTADETLLLVREDQQMVNEAFVDPKPCLNPGLTQFDPNWLPKEDAEFILKYLRGQVLANGQDLDAFRASEQGHPEGSGADGAMVRENAERDVMSRGGALAH