Scaffold Ga0187856_1001010

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1001010
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23327
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001107	Metagenome / Metatranscriptome	776	Y
F003428	Metagenome / Metatranscriptome	487	Y
F046805	Metagenome / Metatranscriptome	150	Y
F097762	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100101017	F001107	N/A	MGHARGWAEFSGRALHALAVGVLPAMFLLRSTRAEIYNILWALVFGFATLNILSLGARRFEQEKTGLNFGEILAILVVVVSIVLLGWEMLYLFHILPIRLTPR
Ga0187856_100101019	F046805	GGA	VLTAMKPRVRKIMEMTKVKDFFVTFGTTWEAVEALANTGTA
Ga0187856_10010107	F097762	AGG	MDSASHRFGKCSECHEIICVEKAVTDTQNTQPETNEMLHKVFRTHVKLKHSEGFSQAAARIVGEATEDK
Ga0187856_10010108	F003428	AGG	MAESECAAYKELKDRETRAHAAWTSFLYRNENKPKLSERSNRKQQKEKMEAYEQAHKARLSHSKTCPTCLSNM