Scaffold Ga0187856

Basic Information
Taxon OID	3300017925 Open in IMG/M
Scaffold ID	Ga0187856_1000857 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25863
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (92.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25863

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (92.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003743	Metagenome	470	Y
F006173	Metagenome	379	Y
F011574	Metagenome / Metatranscriptome	289	Y
F011989	Metagenome	284	Y
F027391	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100085715	F006173	AGGAGG	MRLFELLPYLDLPGQRSLTGAPPIDLMVKRALALLERQPSSQWRDAIRDLETGRPVRLEVSLEELALLLERVDFSSGRLEDIEAMKFWDHLEASSELFDALGYEWTNQLGFDCHESFTLGWHVPEGLVGYLAWLARSSRSVAWLPEELRYLDPRRKLVDVATRVMNVLAAHVNQTA
Ga0187856_100085719	F003743	AGGAGG	MFGQMQVTRILRLSKLETVDEAVAKLLEFAEYPKIFRWFQFPTALVVFLAHADSPDSGAAYVYDRKKCVWLWVDFNDQNYDGYSPSEFDVLINQCHFFGLVECPGLLESPVQWLVTPGQRPTVLGRLPA
Ga0187856_100085722	F011989	GGAGG	VTPIGDIEIEIAFRIAVRGRTSDLAQLLQAMNKAEAVVISIVEKPTASEEQCQRCVTTTVGGFSG
Ga0187856_10008576	F011574	GAGG	LGQQPAGGYLACKKTGGSLARASRQEGGLSMATGSAVEEAKGPQPVARSPRRRSTPPEQGPVGSVRFFLAKAGVNGTVPSLDRKIATEGEAKIESLKTGLNYYSVIEWRATADFAGKNPQVRSEPVKR
Ga0187856_10008579	F027391	GGTGG	MTKEFTQLEARSWLRGYLKGRTDLGLGAAISTMVLEPANPFEPEAPRHPRKAFVLAVLCLLALLGVFVHFNLWS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187856_1000857

Overview

Ecosystem & Geography

Associated Families

Sequences