NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1000082

Scaffold Ga0187856_1000082


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1000082 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91356
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000323Metagenome / Metatranscriptome1300Y
F000419Metagenome / Metatranscriptome1160Y
F003314Metagenome / Metatranscriptome494Y
F006391Metagenome / Metatranscriptome374Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_10000826F000419GGGGGMAINFVRTRVGSDDSIRLQPMERLKVYLFGVTVLFASFGMGEAVYRLLFLEFDGATDRIPVEVLCGLVFAWLATKFIGGIYRNRKERRARLNFIWARNHQIRGAVEGIATVAHPLKNQQSIRVIREEVDRIEWALKEILPG
Ga0187856_10000827F006391N/AMVMMLASSFHHDCPASLVLGRMLLWPAAKLGRLTELPTLWSENVNDKVGKVEKDKSTFDWITERSSCSLPNVFKKLRLQAEEDVKTRNALRPNNSPYKFSVADTGGDFTVLLEAKDVHRSVILSLAERAILVRDDKGNPMFEVTLTFTEEGECRLNVNGEERDFWQVRRMALEELLFRGY
Ga0187856_100008282F000323GAGGVKHLFFVLLLLSSFLLAQQTATDTPGQHNSKSFNGETKVEGCVSRSAGDFILMKHDPGMSYQLHATGKIHLSHYLGQQVEVIGEESPSLSTSSSPSGRPGSPSVALTITSIKTIAKRCSA
Ga0187856_10000829F003314N/AMTRKTIPAYLEDERRKLGDSQLRMGEEAARIQTCTMATIALRKQPRPELPSPVEAAAKAGKTAAAARKKPRAAQKTARWLDFQV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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