Scaffold Ga0187856_1000074

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1000074
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 94550
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (73.91%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000552	Metagenome / Metatranscriptome	1033	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000775	Metagenome / Metatranscriptome	896	Y
F000781	Metagenome / Metatranscriptome	895	Y
F000885	Metagenome / Metatranscriptome	849	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F015120	Metagenome / Metatranscriptome	257	Y
F062060	Metagenome / Metatranscriptome	131	Y
F076450	Metagenome	118	N
F079694	Metagenome / Metatranscriptome	115	N
F098497	Metagenome / Metatranscriptome	103	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100007436	F098497	N/A	MTSPLSLPCDGCGQPASPTHLAQRLQRLEWTTRYRSVHIQALLLGGIAPEADAAFLYCPEGNYQGEAANLLDALRISRAGRSADAILTEFQKRGLFLTHVLECPLEPGTTPSAAQQFLEKQLPFVIARIRRSLKPKRLVLFSRELAAVAEKFTQASLGSRVFTGPYGPLALDGVPSESEMEEFRRALPTGSVP
Ga0187856_100007445	F000775	GGAGG	MKNLNSVFEAYLIGWGVFFLFYVSIAKRTSDLRAEVERLKNALPRGK
Ga0187856_100007458	F062060	GAGG	MNPAFDILKKIGAVNFEWVEAVRDLQTAEARIQELQARSPGEYVVFSQRTQEIVGRFNSPKAGAGET
Ga0187856_100007459	F000552	AGG	MGAMRRKLVWVEKQNFQGWACTECAWAFNPSGPLVGGSIVEMMAIYKRQRDKEFTSHVCAKHPRVTKKSPLTKSLAG
Ga0187856_100007466	F009917	AGGGGG	MFSISSAILLAVVSIGAQFVVFLRWIHRRMRDDEINRVFLRDLALRHLPCIYRALYRMAERQGIALDEMPIVNFVDLQNGGRRS
Ga0187856_100007468	F007488	GAG	MPLRIREYDEGDVEALQAIHAAQGFPYEFPDLRNPLFLTKLVLAGDETDAAEGKGIAGAALLRLTAEAYLLLDPKCGTPKERWQWLLGLHEATRRQAWERGLEDVHAWLPPEIAAKFGRRLTRLGWVRDDEWTPFCKRLK
Ga0187856_100007470	F106044	AGGAG	MPNTIHNATWDFSPGDTVTLSATFTFDLNDPSDGQNVANVLTTLQGRTPHVTLAQTDNGTITVTVTI
Ga0187856_100007471	F000781	GGAG	MLTVAQLAPLKDRDPYLYETLTKIVSAVNATSQNAGVDPATPSPAPAPIASLQVQAANGWFDLSITDPAASRPGLFYFAESDVTPAFSAPRVHFLGAARNLYLQLGNQTLYWRAYSQYIGSQPSAPVSFGSPPIAVAGGGASGPAPLPSSGSGTLPNGLLRGGNGFGTPTGARIVKQTIL
Ga0187856_100007478	F000739	N/A	MSGRISHLRIWLKGIMAAGISGAAGGVMTGLAAVGIDPAHFNLQAGMGATVRIGMAAALINAVIGVAAYLQKSPLPDE
Ga0187856_100007479	F000512	AGGAGG	VKEQNRLAIVVRGVFLYFLGLLYLLHLNLLRENRMIQVIRESHDTPEEVARRLEAAGGRNRFGEPNYRVIWGWNRLAWIGGKFEDRDAHGDLVREVVELRLEPKYPQVNRWHVERWVPPEMYGSPRDWYAKTVESANGVSVPALGPYPERGEYEHCFTLQGPKGEFVQLTPTIVEHVARAIEWARRFPKAKQRGMLYEREARDEREYEQWAYTLMDDAVPALHGRPFVTVA
Ga0187856_100007483	F015120	AGG	MLELVKRFFKTRYVALLEEETARLRGENRALLNSLLGTAGFPPVEFAEPVKPVELPRLRKRSWQQVQRKNELEAMKG
Ga0187856_100007485	F000885	AGGAG	MTNAKVIFIGEVTQIAGVGAVVLGVVLSLHHWGAAAALIGGISAFFVGKKLRGV
Ga0187856_100007491	F076450	N/A	MVLSVGVTSASLQLNPSRHYRLWGSVDMFFQFGPTGVTATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGTGVLFISEIDAQGV
Ga0187856_100007492	F079694	AGGAG	MPTYQNATPPNALYPGDVGYSWNNEAFPGANTSGTQFALSTPGGYAPETGFTVRWQTIFGGAPSAISIKLQGAMADVDAEYQDMDASTQVAGEARQVTGVQAKFLRIKLYSSTGGSGLTAKILV