NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1000048

Scaffold Ga0187856_1000048


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1000048 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113376
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (74.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002273Metagenome / Metatranscriptome576Y
F003042Metagenome / Metatranscriptome511Y
F003591Metagenome / Metatranscriptome478Y
F068371Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_100004829F003042N/AVKPNSKFASADLAVLLAQRLAETLLRERIVPRFVDSYVVEHGRFGLQVHAALYRDLLTLLQREALLAMSARALEIVEAVAGSDGAKVPVRTRRKFAAAFQQKYLAALTRQQGWNAGDALEFQADLQMYQAILAKTGPTRRARKPFEVANHPFVDRCAFLLDSSFLEKARVAASRSLTSLETLTTEVTEGILQVSSDARTPTTR
Ga0187856_100004844F002273AGGAGMDGSVIGLVAVVLTCGIPLAVIYAFYRVRKLRTEERLAALARGAAIPMEPELSQYAKSRRAGILLVTGGLGFMTMFAVIARVVGEPETLVAAAFGILPLAVGIGYFLDAAMIRRDLKAS
Ga0187856_100004857F003591GAGMKQVLASILTTLMIVAMTLSAMVILERATVYVTSIASPLPRAGAIAAEILLGVILLLGTVWLATHLAVLIFAPKHNPPEGGTLG
Ga0187856_100004860F068371GGAGMPESVHLPGYRWLMFLRNVPVRVGIYTGICLSLVFGMWLVLANRVPLLERLAPERKVVAGFCLVLLACLPVLKFYRSPGDLLVSGLLAWTLFSITYRLLCMVFVLLDARYSAFHVFVLGALVYLICATLSWIGTIIWRVRAADISHLHH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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