Scaffold Ga0181552_10062394

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10062394
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2152
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F021402	Metagenome	219	N
F077486	Metagenome / Metatranscriptome	117	N
F090862	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_100623943	F001839	N/A	LKTFEKFYSELLNNQVLTANEKVIYVICKSFVTAPRGCRISHQYLMARTGIKTRKSLIKALDRLTLFGMLARKQIDNSTCHYVFDKETMQQYIQHNQNKRRKISLSKKKSNPQINQQNTNVIHMVKKER
Ga0181552_100623944	F090862	AGGA	LTKYVDPKLVAKALARVTKSSNFHYSKAVEKIKKNRKQYYQNKETKTLQKSLSKDRFNTYLEELYKADVDN
Ga0181552_100623945	F021402	AGGAG	MLTTNLTIDELDRFLQISSFCDSKMPKVKAKTLPTMYKVFENSIGIGDDADSIKYSDKHLARLKITLTSRQLSIYDFILILMLDVAAKDRELLYLRNFPQRKSLRQMKRMYLDWSHTKIGYEYNRSLINVCKIANKNLKKYLTS
Ga0181552_100623946	F077486	N/A	MLNDLDSLLTESERNIMLKNSKTLTNPISMFKIDIVKVFKNKETLKDIFKCKKLQKKHKLQDFKSI