Scaffold Ga0181552_10045857

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10045857
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2588
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020895	Metagenome / Metatranscriptome	221	N
F038472	Metagenome / Metatranscriptome	166	N
F046082	Metagenome / Metatranscriptome	152	N
F097361	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1004585710	F046082	AGGAG	MAANIKLTQRMLNKSEINANKTVKQFLWDDFGMKYTDPFFEVGNKLTVIGEYIDGEEADINFFRRSGRGDTMLSIQKLKQYADAGNEIRLISDSESDGDGTRIFISVYSSGSETDAA
Ga0181552_100458573	F038472	AGGAG	MRYEMQNFIKMTKRKPSNVGQSGDRQKAARDEWKRARKIARQAKLNLRKSVA
Ga0181552_100458575	F097361	AGTAGG	MLYLLFTPFAGYFAMLITVVIMQSIGYDVEGVDTFTIWCIYTQIYVYLFVITKLKGKSNE
Ga0181552_100458579	F020895	N/A	MMPVHGTIMPSIKAYEIVLEIDGQESCITLDDTFPAIDSWASACSMAVLMAKHIHPDKEVEFVSCAEYEADEYADIGYVYDAPVILQ