Scaffold Ga0181552_10036277

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10036277
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2977
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N
F045772	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_100362773	F043149	AGGAG	MSLRNSNIRLYTKLDNAHKKIMGAKDKGRQCVHTLQEFKEYNQLFRRIVEAENKDARFLY
Ga0181552_100362774	F008307	AGCAG	MVKVIKKSNLELTVDFEEIFDGATVEEATEKAHNQKMPSEFAKANITDNKLISANIKIIGEENNELKK
Ga0181552_100362778	F002495	GGAGG	MQNNGSGKQKDFVLFPYDANNEKAIKIDFSGNVTLDNGNKGTILGTKAASKDGKTKFVRVFAQIGVLFKGDDKFTGEMNYPDAGGQKGLIGWLNDEGTILSGYKNEYKPKQAKTQSKEIP
Ga0181552_100362779	F045772	N/A	SSALGRCLAAFGLSGSEYASAEELVNALNNQSTNTQSTTKKVSIEDEIKKQTTETKLTALYSNWKKNNNSDDKIEKLFEQQQQSIKTNGGQNAKQW