Scaffold Ga0181552_10035565

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10035565
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3011
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002223	Metagenome / Metatranscriptome	581	Y
F037682	Metagenome / Metatranscriptome	167	Y
F090415	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_100355652	F090415	GGA	MKKLLMGALLLLPLSAFAKEDAPIYWAQKPLQCSTTDGIIELVKKYGEVPTIILNGVTALPNGATAPSKFVIALNPKTKTWTLLEFTQGDQACILGTGEGDITFGKQGTRT
Ga0181552_100355658	F037682	AGGAG	MTQEELIRERDFYRAKLDESNARVKALEFDNAELVKRDQDLSKRLAENANRGTYRPRPKRFN
Ga0181552_100355659	F002223	AGG	MEYKQMSQNSWIVKVQENGKTKELFIEFPPGSLDQVGWDTGDTILWEELPTGGYSLKKKEDDSDGE