Scaffold Ga0181552_10020745

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10020745
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4120
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F009699	Metagenome / Metatranscriptome	314	Y
F020115	Metagenome / Metatranscriptome	226	Y
F032639	Metagenome / Metatranscriptome	179	Y
F070055	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1002074510	F070055	N/A	MVFNKRKQAIKGHPSEHLIHDDCRVEIEVVHKAFGMNDGMNVLILDNDTNEVILEEWEPDFEWAWETAKYYSKKYNLEILDTIPY
Ga0181552_100207453	F020115	N/A	MMNNTMTYEQFEIFREWAERVANTANDTDTHIRAIDLVHDIAGILANDEHFLPRL
Ga0181552_100207454	F009699	N/A	MMTDKEAQAFMQKVDATAPFWVELHDEDRPTIQIQGSTVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGLTGGKQKVADAINAMHDEFMGRFKEQNDEQETD
Ga0181552_100207455	F032639	N/A	MNKKLINDDGFYAGSELKWGMDDVRNVLERYGIASTTPKEDVERILIRSFQNNYRLMEVIDETINETVADMIYEGQLKTDEQ
Ga0181552_100207458	F008453	N/A	MSKYANNYAVYRIFRDWNKRPKVLMDGLTREQAQTIVRNTPSEEDSMVVFDEEPRSKQWGRR