Scaffold Ga0181552_10017385

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10017385
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4562
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F007417	Metagenome	351	Y
F077490	Metagenome	117	Y
F104980	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_100173852	F104980	AGGGGG	MERFAERFDDAFYIWEDHIEGIDKPVLWEYKNRDKCFYQYPMYRRSDYKILVQLTKEQRKIALDFLDALHAPLNEETRQHNNEKARLRRLK
Ga0181552_100173853	F077490	GGAG	MKNKIKVTGTINSWGHNSIDSAEVFFNKHIEDCSCGGSYSYSAMLQMEQIKAGDFVDDCATIECDNCYSMLDVDDYDIALEIPNNLKEQFAKEKIWCKSKDYVEMSQGVSTMDWDVQMGGKSFEELAEQELKAQGVL
Ga0181552_100173855	F007417	GAGG	MTRYTLEVKLPSLGWVVAIKTSDLFYMARKRARLIKQGHEVKLTKKRGK
Ga0181552_100173858	F001942	N/A	MPKKTSEDHQSNSRLGALGESLVQTFLLEYADFCYSTQEKHPADLMVEFANAKYTVQVKSRRESKEGKYTFASETSRSMSEIYKNYHCDILAFVFFSQEHKRILFKPNTTSQTYFTFDKKIITPSLEIDSLQETLDTLSQVPVLNPLK