Scaffold Ga0181552_10014459

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10014459
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5073
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017634	Metagenome / Metatranscriptome	239	Y
F020163	Metagenome / Metatranscriptome	225	N
F077250	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_100144591	F077250	AGGA	MNLYFIAFLIALVFIISYKPGSGTLQKWFGVKEGMHHEMMEGEAVENPIFKVTSRDEINARELDNIFGIQR
Ga0181552_100144596	F020163	N/A	MITILLIIAFIIIFLLGRRSGYGKPTNPDLWKPIDDMLPNLSRFSDLDPVAYARFEQELKLAKEEMISPDLTVLKGVSLERSGMHLRRAVDEFSSLSGSLPSGDSVYHDEIAELSATLMITGESVLIKAAEETKQPFTPRLLNALID
Ga0181552_100144599	F017634	AGTAG	MDSFNAIASIAFGMIAAWVVFEKSETYIPLQTDPGDDPSKYYASPMEVMSGTLYVTNPESLYAGFSLEPGKQVQKIPIGPVVDRLGNVQEIPGLPARDILYPIKEDVNLDIEMIPVPGSGSGEVEVFPTA