Scaffold Ga0181552_10011153

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10011153
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5868
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004345	Metagenome / Metatranscriptome	442	Y
F025991	Metagenome / Metatranscriptome	199	Y
F028500	Metagenome / Metatranscriptome	191	Y
F036682	Metagenome / Metatranscriptome	169	N
F042310	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1001115310	F004345	AGGAG	LLIARMKMIEQVIVGVTGLGYLTVGILQWAKGEGANGMIWIGYAFAQVGLWLNLK
Ga0181552_1001115311	F042310	AGGTGG	MVKLEVIKQYGYNEHGVCINPFGVKPLWVQKLAERIRCNHIVTTAEEAPF
Ga0181552_1001115312	F036682	AGGAGG	LTDKVSGDGTAYVDHDYYWRPLETAPHGVKLQLLSIYGVACHGLLSPAIIEDGFWIGWTPLPKLKKEKNDN
Ga0181552_100111535	F028500	GGAG	MYEIQTIYSNKVVYRTTARANALYWLELNNQEGLFKLVRVKS
Ga0181552_100111536	F025991	GAGG	MRCTCCNVMLSPFESTIRKVSTNEFIDICEKCLSFIDDDVKVLTREDLRNEVGTDVANYIETLEHFNEDNYEQY