Basic Information | |
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Taxon OID | 3300017824 Open in IMG/M |
Scaffold ID | Ga0181552_10010642 Open in IMG/M |
Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6025 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011932 | Metagenome / Metatranscriptome | 285 | N |
F014251 | Metagenome | 264 | Y |
F026436 | Metagenome / Metatranscriptome | 198 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181552_1001064210 | F026436 | AGG | LWLNIRMQKTEWIYESPDRGDTVYRRRANCTKRELVLKKEKDHPIVDQIDDIVAGSPFDPALKEMLDKLQVYWSLRNANN |
Ga0181552_100106425 | F011932 | GAG | MRIREFTERSDKPSAQQLTALAEYLLGRADDEDTEHTVPIGVFLSMAHNMGVNITDQQLRTLATQNPLKNIISNVDADNIVLVGAGVTGEEGADTMTVDQAQDTVASMADAANPLT |
Ga0181552_100106427 | F014251 | AGGA | MVGNNLRSRVTEKAQKLLNKIADELLNSNPNAIFRNGDSIMAFADYEIEKISKDEYKIYKNDCYMITCSSCRIALSYCILDKHKLQLDAQHLVALENKLLHRQSEMMHYRHVITSPSTDDFRKEVVLHRLSSAKYEYNMIQKQLTKTINVAKYCQQKGFENETI |
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