Scaffold Ga0181552

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10009661 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6351
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6351

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F011192	Metagenome / Metatranscriptome	294	Y
F030153	Metagenome / Metatranscriptome	186	Y
F033765	Metagenome	176	N
F062256	Metagenome	131	N
F072288	Metagenome / Metatranscriptome	121	N
F106097	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1000966111	F009045	GGAG	MNKLSENFTPSRTSRGNRHIVKGQIIQGDEYVVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGAK
Ga0181552_1000966112	F072288	AGGGGG	MKKEDNPFLNGLIAVDPYPKTERLNILEDLRDEICEVLAERMRDTPYSESSDSYLVKSLVDRGLADSRALPIANALRDGDMNALAFAVCACDEWNFPHLLKIEPRIFWMLLVNETDPVLIARLEEVMR
Ga0181552_1000966113	F030153	AGGAGG	MSLIVDFTKIDEVAKDELWQYQEMIGYYMMAIGMGEITEKNHLEVYARLVLLQASTLDDSKPWITLRMVKGLINARFNIAFESKAKFSSRMMKATLREVERQEAKEVKDVA
Ga0181552_1000966115	F011192	AGGAGG	MTAKEMQDQDFISFQDDFYNLLEKYGVGSINIEHPQFETICNLRNKVAEFIEQEKYEEEY
Ga0181552_100096613	F106097	AGGAG	MNRQQMLDILLEENVNGDWTDNYYFEKDNIHIVWCEALELWLMLDYKTFPKTFESSSTLEEAFKYVFEDQLSTEGIKHFLNERGLL
Ga0181552_100096615	F033765	GGAG	MKSLLRTILDECEKNKLMYRANAYDLWNNGCEDMIVPWGYDFEALTETMKAFELDERLGNIQIIPESKVKTHAELIKEIRFNALKNCFSEYEEHFKKCSEDDLIQEFPDEYYSGHMWIMWTNYGGNEHLDCFTDYTTSLDKYFDVSELRNEWEDQYNEFKLGLI
Ga0181552_100096616	F062256	GGAG	MNINPKQNEIYAKRSVNIGDASVDIDILIPDKLAKHGWRAMILPKDFYDPHTRLGKMLNKAIADYLTESDDYVVCGMNQDGSLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181552_10009661

Overview

Ecosystem & Geography

Associated Families

Sequences