Scaffold Ga0181552

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10008710 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6727
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6727

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F008346	Metagenome	335	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1000871011	F002221	GGAG	MKTYLDESFESELKKLRIYEAESFERWGSRKRIFKMLGVDFEIKFCRAESMFKDALYKGHVKEKIKMVEMMTRAFDSLNKKCEESGYMRIQPNTRCFNFDKKTALVCDTDDEKPSLLKIHKDEPDMMIFSIEELLRCIPEDFMKAKELLSKLDKAVNFQRISYD
Ga0181552_1000871014	F008346	GAGG	MPIKFKPSVKVRDRATGKTTVEHSYIKSMTIKELTDYIESSSSKKKVIQKCKNEIVRRNV
Ga0181552_100087102	F063662	AGGAG	MEVVFNILGGGEIRLPKREVRGYYKDFMTGETKVQVGNDEHKVRESLTEIAYLMGVVQ
Ga0181552_100087104	F013088	GGAG	MDEVIKKALWIPEELHKDIKIFAIQNNLTIEQASQMLIKLGMVTYEAEKNHDSV
Ga0181552_100087105	F093807	GAG	MTQYSDIVETQRLKLNKQKDEWYIHVNNGAGYTEVKDGDTLTITYHATGKKEIFIDAN
Ga0181552_100087107	F006845	AGG	MDLHSYLLEEDFEQYCRMSFDKILVACEFLGIINDEDYESFKERCYTQLETDYINSIDKTIH
Ga0181552_100087108	F038657	AGGAG	MDILGGMTNSEEKPQIYFGFKTIGQQFFANGETPIDFKYLQLDIDTFKSGWGRYTKSDGFEYQWDAKFGVVDPKPADDWKRAFSCWVMPDGGHAMLWQRFTFAESSAFNKILGTFWHEKDANVGKLPVMEYKGSKPIQVGMGSSSELTFEFVKWGDRGFQVPDWYVDPDAPVDNDDGFVSPNEGLADKVAEMVAKTELSDDDIPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181552_10008710

Overview

Ecosystem & Geography

Associated Families

Sequences