Scaffold Ga0181552

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10007385 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7394
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (31.58%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7394

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (31.58%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F005132	Metagenome / Metatranscriptome	411	Y
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F016811	Metagenome / Metatranscriptome	244	Y
F024348	Metagenome / Metatranscriptome	206	Y
F056899	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1000738511	F013231	N/A	MAEERNYQTCKLIKNRIDLYLYEMSKLFTNIGTDSTLEEVQEAYEREKEYIELIAKLDPEKADRLRASY
Ga0181552_1000738512	F024348	GAG	MSIENYYEDLTSDEADFILDLYSVIDRMVFNSRPITLVGLGYELGVNPQELSDYLPTIIQILNKVEEEYEVR
Ga0181552_1000738513	F008384	N/A	LKKNTRYDKQFIEEQALLSVKQDRLTEPLGEFILQRAVEIAGSAFVTDGNDELQQALIDAAVMRTCEKFLHYYKRGKSAANLIISIIYSTMTNKIVSLNHSDVYGHNIKGYVVCVENGEKFTRLQRYVKDSNLSEQL
Ga0181552_1000738518	F005132	AGAAG	MVDVIFIDDNYLYQNFPLPKRMDRGSLLAIIQLEQFTSTQDLLGSCLYEDLEAKVLAETLDATEEGLFKLVKYSLAMFTAKAAISILRTETARTKNEEGKQDQYILDTISSTIDSKLGYINKRITNYILDNAAIKAIATADGCDNDLFNEEDTYQGSVFFPKDGITDQTCEDGGVTYNL
Ga0181552_100073852	F005010	N/A	MIRKRKHIREIQKYLEMLMIDQVNLTIHASRFGWTEDIQNQLSNSALLIRKYQRRLRLIK
Ga0181552_100073855	F016811	N/A	MSEEEKAEELKQGQAIYDIGVRLAWKVKRGNGFSNTYLGTEDRPFQMVTRAKSIDHINRSPEMVAKLMAFNGLTGKKIYDFHIEKEFYRKEISKSFSHKEEDYEKEFGN
Ga0181552_100073859	F056899	GAG	MAKRNTFVTASISGDYGQDIVMKYLKDKGYDVEEAPKELFYDWDVKATNGERTITIEVKYDSKAYMWAARRGTPEQPNLYIEFRSTTRNCDSGILKSTADFYFYILKTNKKDIGFVFDRKMLLKHLQSASYKVVGNSATGDDNAEGWIPPLHELLMSSRGYKATIDLTEYGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181552_10007385

Overview

Ecosystem & Geography

Associated Families

Sequences