Scaffold Ga0181552

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10006996 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7603
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7603

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F002716	Metagenome / Metatranscriptome	535	Y
F005495	Metagenome / Metatranscriptome	399	Y
F012532	Metagenome / Metatranscriptome	280	Y
F028655	Metagenome / Metatranscriptome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1000699612	F012532	AGGTGG	MSWVTAFLTFIGVGASTAATVAAVVSWTVTLATLAVGVKGYRQARDMMAKGQVIMANKTSAGGKLPVIYGTRRVGAQVIYMDVSDNDSRDLYVVYALSVGECDEILGRTIELDGNLLTDSARFKDGGYIGSDKISSGSGSLNTVSQNGLGIDAGAGQFGTDPTLKYRYVFNLHHGAASQTADPMLVASMPNWTSSHRLDGVCYIAAHYGYDKEGMWSGVPQLTV
Ga0181552_100069962	F005495	N/A	MLKWNGGGNPTTLIMKKYKILQDTVANGSKVHAGDIVELDQQTGHSLCGYGKAEIHVEKPKAKQADRSVGLETSEVKAPKKRAKK
Ga0181552_100069963	F001582	GAG	MPIESAADFNSYVDINTGHGVTATFFEVQQSLWDQRNGLIDTWFDIDSGNTTNINIIIDQEYFNIEGGTVPVAGYQPRAIIKATDAPYISHEDKLVVNAITTNRGSVLKSETTFLVKTVEPDNTGLVSLVLEEQ
Ga0181552_100069964	F002716	AGGAG	MSQYQMETEEDMIAYLDIEYGHGVSAVYTNNGSDSTIKIILNNEYVEQEEGIGVEALKPIAYCRTIDVPNISFGNTLAVAAIKDVDGNTLKAAQNYTVVNIQADRTGFSALMLEEI
Ga0181552_100069968	F028655	N/A	MSVIDKAKAHFDSLEIKEIEIPEWSEGEKVLKVYAKPLTLAEMSKLQKFAKDDDVALMAYCLIYKALDSDGEKVFDLSDKHALMNNVDKDVLARVATEIMSSPSVEQQAKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181552_10006996

Overview

Ecosystem & Geography

Associated Families

Sequences