Scaffold Ga0181552_10006857

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10006857
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7706
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011191	Metagenome	294	Y
F073441	Metagenome	120	N
F077797	Metagenome / Metatranscriptome	117	N
F083263	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1000685710	F077797	AGGAG	MTRRIKFDGDIPCNITYGDLSCHQKDFSRHGDRDRHDKTYRVVSADHINAVETRNYLQAKKYQRDANAIADAFAWLKDC
Ga0181552_1000685716	F073441	GGAG	MIKPINPIARAMAHHRRRKAIVPSKKDYNRAKEKKNARQFYIPEDSSKKETTE
Ga0181552_1000685722	F083263	GGAG	MTTMNDMFMAYQTHKGFAKQHNLEPIGFKEFTGIFIHFSSVFLQQSVAIYTAAKNSQLGKNQTKETIQ
Ga0181552_1000685723	F011191	AGGAG	MKAYFINSKDELIVEVDCKDYHHKKELLNCNMLELYPHSVNGNDVWTDEEANLSEYNYFFELDNVIVSGSAIILSCDDEGDSADVKDLTIDELKSRVTFMGKRYINHEKLFSNFRIEEWK