Scaffold Ga0181552

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10003162 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11809
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11809

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037217	Metagenome / Metatranscriptome	168	N
F046180	Metagenome / Metatranscriptome	151	N
F078156	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_100031621	F046180	N/A	MMYMNTTYSTKQSAVAMRKRMSDDTNKYNFNRKRTLDRIREGSIPQQNTTKKYDISNAEVNAIRREGNHPPFVVAFAPSAYAPALAVNEETKRIQAQYLEQQQLTKNVKEDEQKLVQSFKKLMVEQRGKILKVPPGQQFALKTFHDYVWNRGADGQPTSWVINITGKKAKETTI
Ga0181552_100031622	F037217	GAG	LNWLNNFNAVTKKKADSYIADKRKYTIKYGFTDIKKIFKDTFGRESKEFLYISVYEEFPSRDDLGRLVINPPNMTGNVEKTMNYTVKKNGVWTIYLNVYKTMDIFGRVVVRFSDATSKLISNYIAKDRLKNGEHLFGTFGKDGKMSATIAAWLVEARIKDGKVQGQTKTPGAINLLRHAYISQKIKEEDVMKVSITMKHSPLATELYVRKIQPLLVENMIKIDERKLVYEELEMIQTRSRVLEKRKREEEAKTKAKKGRVVVI
Ga0181552_100031627	F078156	N/A	MVNLFSLTPGGGQKVSAQVGSVIEELDFGNIASERHATKREYSTLESLAVFAFARTDLVRYHLESIDFEVKQVFVVLNTFSSDVTLKMRKVLKLFDCSQPKFNLETNGLFVNREFQCLNPMIRALNILESHGSNFGFAGSFNVIAKKMLIDNISYTIISNDDTSFRPGSLRKIAKIFAAKPKLCLLLFLHFSSFGITQLALHKIGVMDENFWPAYSEDIDYYLRSILGNCQNFHASDRRDRFFVNHGENPDIQTESTTLKSGESYRRMIKNTEDKYYGRDAYLCRKWGGPCPRKRDFLNSNKAFKAIFRRNREEHEILSFQDQFTSLHENLFHHPYNDSSLQIYWWNNTETANSVASPRSVNKNYAPAELVWKLRDWSLLSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181552_10003162

Overview

Ecosystem & Geography

Associated Families

Sequences