Scaffold Ga0181552

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10002425 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13593
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (19.35%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13593

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (19.35%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029108	Metagenome / Metatranscriptome	189	Y
F040577	Metagenome / Metatranscriptome	161	Y
F041707	Metagenome / Metatranscriptome	159	Y
F042280	Metagenome / Metatranscriptome	158	Y
F048887	Metagenome	147	Y
F091852	Metagenome / Metatranscriptome	107	N
F092065	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1000242511	F092065	GGAG	MQEIINKIYERMNFLAHAHTNCQETEQAYIAELSCLNEVLDSIEDFPWAESQVN
Ga0181552_1000242519	F042280	N/A	MKITNKWEETFEVNVGDYVGFKCDIEQCGKVKQIQSRGALIVENKNGFDGDYIGGDTEVLVGFDEVWKENY
Ga0181552_100024252	F029108	N/A	MKQINPNKYLIGKKKMGKGKVGTKGGQATRTGAFGGKSKFLKKKIDKSE
Ga0181552_1000242524	F041707	N/A	MKEYNIQLGLTHEEIQSLLNGEISTFNFIPTDDTEYNDRISVHIKNVEEDSPLSDCMNLVVDNLAEVQ
Ga0181552_1000242527	F091852	N/A	MLNLYLELDKCIEKFVQQIIVRGFLKIGDGSYKSVYSKNKLGYVIKIAESLNDEFAELPSDLKKFYIQPYYIDNQIVIQDRANTKQNAQAHKKIHSILGNDRCHDLDIYKQNCGMLKGKPVVFDFALI
Ga0181552_100024254	F048887	N/A	MHTRREIDNLLDKMNQIIANKKESNKDCGELNKIKDEINKKTNNGKYAKGMWTDSPEFMYSKSTQQ
Ga0181552_100024256	F040577	N/A	MTELQKISGEICEIFQNKIKELTDEQAQTLNLHNNSMNFCIQLGDEAKAMWEARQTLKYLHEITK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181552_10002425

Overview

Ecosystem & Geography

Associated Families

Sequences