Scaffold Ga0181552_10000007

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10000007
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 167003
• Total Scaffold Genes: 199
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 152 (76.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018721	Metagenome / Metatranscriptome	233	N
F049641	Metagenome	146	N
F053628	Metagenome	141	Y
F053908	Metagenome	140	N
F073568	Metagenome	120	N
F095568	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_10000007146	F053908	AGGA	MKHFKLLVAVGFLSAIVGCAPFESPVKAQGSQTFKPGFTIDYTDCGEISSPDGANSMQFGKPDESCGGRVVSDQGYKNITQIRFTADLSSANGNFVTSTFYMVNNPTNPSLQPIHDNYCDAGGNKAEWNCQEVDFFEVNKNVFFQHTMHIGDGSVNAPQNFQFSYSTTEDQCFVNLAEGTGIVSWNGIDIKQPVDFVVDLDENGMTVTIKQGSISTVVYQMGEGFSGSTTFDSDQIARWQEGRAQGYWLNLSRWQDDKGQPPWSPGAPQGFYNWSCPWGSVCGATDSYFKVYNIEVDAEDTI
Ga0181552_10000007181	F018721	N/A	MYIMNNQGEGMYLIIDNTNQAIHREPNKKSYASTQYKTVGAAKAGITRTVKYYQKAYDQVAECVANGEPEYAAPLHNAYRDATEPQFNLTHKQFASSYTIVAVEDYVEPMITKTGICPGTGKKITVTEGINTPHYMSTLSESYWSA
Ga0181552_100000073	F049641	N/A	MSKDHLEPHRPANAGPEDKFIYESPDGGNTVYARPLGVHEMAQRKKVYENPEMLEEKKFYERWHMYRDILEVSKNNPALSKLLEQVEIVYNLSEDRK
Ga0181552_1000000743	F073568	AGCAGG	LNTVEVHLQFYELDGRWKGHDIFKWCCVTKTPPRYERFHPRPLAHTDLSSIINFNKVRDWCWDTWGPSCDMKDYDRVHELSNFMSLAQYNDSTYDTLNENWCWSNEEDHKQRRIYLAGDEERVWLETRWQ
Ga0181552_1000000762	F053628	GAG	LNLKISHLVVNGCSYTYGHGIADPINDCWASIIAKRLGVPLVNLALPGQGNQAVFRRTMQYFYKDLLHDNNPFYIHAYTQSSRRECYLADAYAGAPPHHFHIVDGYGTHSQLEKEIILNSDDHYYCLMEQDKLHRWTSINSLLDTNNIPHLMSDYMPNTSAVVQDFIERYETILINELELHSGKLRNFNEVTQDFDKTPCLHETVEGHKHLADYVWKEIEKRYDEIEVIDCNHAKLHDILIHTPETEKDVQYNHTNTINFYPLEFCRNVYYFHELGLDYLNKNWAGKPETDHMRP
Ga0181552_1000000766	F095568	GAGG	MAQSNAQKQLQQYDTDIAVLKVEFKNLDEKFDTALNDVKHDIKECETLIKEGTASTHKLLTDFQKSNQESHDNMAQKITALERWRWMLIGAGMVAGTLGYSVIEFWMSH