Scaffold Ga0187818_10026644

Overview

Basic Information

• Taxon OID: 3300017823
• Scaffold ID: Ga0187818_10026644
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2474
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050089	Metagenome	145	Y
F073812	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187818_100266442	F073812	GGAG	MTDPRKELESALSPLAWILNFIWDTIRLMFWFFMSPILIVCWCFYHPAEARVHFVGAIPLLWNGNWVTRGLLGFFVLLIASLFGKTMRKICWGIIKLALVAGLIGYIYLIFKLA
Ga0187818_100266444	F050089	AGGA	MARQVFVFDAPPGREMCDFCSASPTARLYACRNFIIPRTKHAVFQHESVGAWAACDRCAVLIDAGHWSQLTDRAFRRFCKKHGVSRYEEFEVRDQFREIHQLFKEHMIKEV