Scaffold Ga0187818

Basic Information
Taxon OID	3300017823 Open in IMG/M
Scaffold ID	Ga0187818_10018404 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017823 Open in IMG/M

Scaffold ID

Ga0187818_10018404 Open in IMG/M

Source Dataset Name

Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2988
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2988

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

35.9061

Long. (^o)

-76.1569

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F047844	Metagenome / Metatranscriptome	149	Y
F067006	Metagenome / Metatranscriptome	126	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0187818_100184041	F047844	N/A	MRSLLSVRGVALAAASMICLGAAAIAQDGDSPNSLGDLARQTRAAHAVAPEDKSSKAQSLVDEMQQEQEAAENAPLGFRNYDAGDYRLFVPYPYNLEGRDNGGAVLAGSRLGVTNTEVMAGTPVPFQGGPNDKDLLNAARQVASMHGQQANCYALKQSSRKTYRCQWQNSPTLLGHQVWGSMEVIVGSNSLIPVMCVSPDDVHQPCVVYDTWGHNTCSDRERQLYGWDHRKAQAAADATYRDERTTAQVCDQIIYPSIQLKEDIVVHSASISESHAPRPAAKVAGISAQENAPKEVEGPSLAALARQTKQAPHGQARATLDNAEGKSMAPPGFQSFVLQYCQNPQQCSEASVVIPEKAEVVSRTNGQHIFKAPLDGEAVMLYAGPADVGAPYRSLTDPDFIRMRDLANANGWSREKPDAVSTQELTIEGRPALMTRFRFQRDQKRWWIGERALIEDQAGQFLVGCAAPEEHFADAEALCTTLVNSLRLP
Ga0187818_100184043	F067006	GGA	MRIQTKDRRFRMRRLHSIFGAGLALLFSVGVTAAHLHGQTQTPQHKVLLQADVKPGEVLRYELEAAGSFLPVADASGAILAPARGPCDYAMAAIVTLRPQALDKDGNIPVAARYSDTRVTSVRCALFSTQDFQRRLTTLQSSPVMFRVGPHGETALSQGSDGYFKYWDGGDLLRKVTQDLLHTEFSPSPVAEGDSWKARGQFAYSHNRALKDLELSGSDLRFRNIVQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187818_10018404

Overview

Ecosystem & Geography

Associated Families

Sequences