Scaffold Ga0187818

Basic Information
Taxon OID	3300017823 Open in IMG/M
Scaffold ID	Ga0187818_10006423 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017823 Open in IMG/M

Scaffold ID

Ga0187818_10006423 Open in IMG/M

Source Dataset Name

Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5027
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5027

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

35.9061

Long. (^o)

-76.1569

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000275	Metagenome / Metatranscriptome	1391	Y
F001851	Metagenome / Metatranscriptome	626	Y
F005764	Metagenome / Metatranscriptome	391	Y
F023459	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187818_100064232	F000042	N/A	MTNTKFVVKVSRGGTHAPRYVERIDRTPIRTTSDRKLALVMGKFAAEDAAKSLQNSRRIPELVSVQVGS
Ga0187818_100064233	F023459	GGAGG	MLVAEKAVGLSWVSVRDRLPFDGHECALICCTPNSSELRRAIGCRLHGNWEIQDRTLTTCDVRARLKLPSTPFDI
Ga0187818_100064234	F001851	AGGAG	MSATSISFGLLIALFTILLLYGMRRVKPQIAGFGSQRMCPSCGLITSRFKARCLECGKSVPAASVARS
Ga0187818_100064235	F005764	GGGGG	MEPILYSLRAVLRGALILGLSLSVFAQIPAAPDASGFPLGRKPPDFPLTALPPAPIPHPVFDFRDIRIGDDMKEAERTFLALKQPSLDSRPGLCGSDGIKRIDTCTDVLDTGEYVNMTILDRRVAQIYVSTDRRTQGNTFNSYVLALGTKYGSPDRLETRYYRNGVETGTSGEHLRWLNGDQYMEGSEAERAITIGSKALDTKIAEQEHAYERH
Ga0187818_100064236	F000275	GAGG	VSEFVSSGMRRGEFCQSRGLSFSTLDRHLKKRRWKRKTRSTPADGQLVPVELTIRKPLAEYPASCGLAVVLSGGRRIEVQRDFDVHTFERLMSALERV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187818_10006423

Overview

Ecosystem & Geography

Associated Families

Sequences