Scaffold Ga0187802_10021133

Overview

Basic Information

• Taxon OID: 3300017822
• Scaffold ID: Ga0187802_10021133
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2240
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009161	Metagenome / Metatranscriptome	322	Y
F012697	Metagenome / Metatranscriptome	278	Y
F097849	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187802_100211332	F009161	N/A	MVVFSDSQLRAVWAVWAAADRVPFEKRGVFVERVVARLQLQRGFTDADLDDAVRAALTGLVQSAA
Ga0187802_100211333	F097849	N/A	MRLVVRIIGGAVVLCCSFFITLWLTEPEAPPQRLEDQRISYYSDLPTASQNAGLRYSEQMKGGVDGFSRINEREVKVGGWVADPLGDSTPSKMFVFLNGSLVASGQTSGERPDLKRALI
Ga0187802_100211334	F012697	AGGAG	MSDNHTAHDSLRRRLAAVACVAPIVQCIRKMRVEGLGDNEIAGLLRHAADELDEGSIRKNGKVNLAA