Scaffold Ga0187802_10003487

Overview

Basic Information

• Taxon OID: 3300017822
• Scaffold ID: Ga0187802_10003487
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4591
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040963	Metagenome	160	Y
F061120	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187802_100034871	F040963	N/A	MLFFGYFSCLIVAFTAAAMWLISSFNPSALEKRHHPRPPIDQTVTAEDIAHLHLQVTKEASAAKDDVAPVKHHKPKVFARRRDTYAYGNSWGHTEAYRNDPRGFFIH
Ga0187802_100034872	F061120	AGCAGG	MPRLLLLTGFVLLIANSSFAQSGDPTPSQCLLVRQAVAQYGFAAARRYALEHYGAEAVKTGDKCFTKQAARGSRSY