Scaffold Ga0181565_10232154

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10232154
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1257
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F048238	Metagenome	148	Y
F056529	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_102321543	F056529	GAG	MATKHGNRVYIQVLLEPFRGELFMQEANAQGIKPSALIRQLVYDYLAKNTEEETYREALVNDKQKWQDAVDARLEGRARNRRSKAQSEQNID
Ga0181565_102321544	F006772	N/A	MERLNKAIQLATTADLQRAAMFLEGAREVRKGSRRQRTNARSAQANAWKKKVDNSITW
Ga0181565_102321545	F048238	N/A	IGNRLKALSPLSLTHSSAQQMGTKNVHLHYCQIADEHCPLAITRFTSFDLDDKPLAVEQVTYESNIDHMERQVINALRCNVEVSILTATPIHEFKRLHHIFKSD