Basic Information | |
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Taxon OID | 3300017818 Open in IMG/M |
Scaffold ID | Ga0181565_10188737 Open in IMG/M |
Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1423 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F031863 | Metagenome / Metatranscriptome | 181 | Y |
F056582 | Metagenome / Metatranscriptome | 137 | Y |
F057337 | Metagenome / Metatranscriptome | 136 | N |
F071664 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181565_101887372 | F071664 | N/A | MIKKIKSKLLTYLFTDWVKNETDLETIKLTSQMLKNREIQITGIKPVLGFRAHHKTQIH |
Ga0181565_101887373 | F031863 | N/A | MFRELLPVGNDLYVVKRKFKIEHWDKIVQHFGAKEVCKAYHCETILRGRDGYFYLCDKVDDAKIIE |
Ga0181565_101887374 | F057337 | N/A | MTYSELSTMTIEDLRTLNSMVVETIKSKKSLLALEKKDSLYVGAIVSVDHPKMAGHELKVTKINRTKAVCELINGLGSYNVPLSMINIING |
Ga0181565_101887375 | F056582 | GGA | MARYKTYKIEDTPSEKFPQMVTISKKVKGKLFEKKFISDEKAKVWIEFQSANKLIIKGAKKVKGELSSIGLANPLW |
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