Scaffold Ga0181565_10022590

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10022590
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4661
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F006094	Metagenome / Metatranscriptome	382	Y
F023756	Metagenome / Metatranscriptome	209	Y
F071780	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1002259010	F006094	AGGAG	MLLHEFYSDEDCSRGMGAYRKATVFVEPDGSYTVYMMQDGAIIEERNIKGHSEVYAENCAENWVLGVI
Ga0181565_1002259011	F071780	AGGAG	MSDNYDSGFGLVLSDYERGYLTAYYDTVVFDAMAGCCDEDWFGVQIGDRMFDLNAWADEDTGRFVCTVYECDWDGKQNNWKTNCRHSWILTEENDK
Ga0181565_1002259013	F002430	AGGAG	MITLNLPKKQVNAILVALDAEIDHQWNCSRPDWETFPEIAAMLMAYYTVRCKFDEDDCR
Ga0181565_100225903	F023756	N/A	VKIKHEKLMTEFDHDWNDLSLFEKLPVRKTANPKRDNWKRDRKAARKMKQSMQEKNYA