Scaffold Ga0181565_10018684

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10018684
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5168
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F009699	Metagenome / Metatranscriptome	314	Y
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y
F070055	Metagenome / Metatranscriptome	123	N
F084107	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1001868410	F009699	N/A	MMTDKKAQAFMQKVDATAPFWVELTAEDRPTIKIQGRDVPRCLYNLMITRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHDELMGRFKEQNDARQEQETD
Ga0181565_1001868411	F084107	N/A	MNEDIKLQISNAFSDTGAYWKLIDVLSNQNKILNRDEIEELVDRLEAFIVQEIDEIIDER
Ga0181565_1001868412	F020115	N/A	MMNNTMTPQQFEIFRQWAERVANTANDTDTHIRAVDLVHDIAGILANDEHFLPRL
Ga0181565_1001868416	F018534	N/A	MALPTLTDFLNSWEKLIVTGMTPERNDSVMTTTTNNIPVAIEYRHQINSSTGECSTIAFLVAYDEEGNRVTLRNQTYGCFGDEEKQFHQWFAKKMGKACGLDVSRRLDVSRAVDDFLE
Ga0181565_100186843	F070055	N/A	MVFNKRKQTVKSHPSEHLIHDDCRVEIEVVHKAFGMNDGMNVLILDNDTNEVILEEWEPDFEWAWETAKYYSKKYNLEIVDTIPY
Ga0181565_100186845	F008453	N/A	MSNYAVYRVFRDWNKRPKVLMDGLTREQAQTIVRNTPSKEDSMVVLDEEPRSKQWGRR
Ga0181565_100186848	F029600	N/A	MKYWNGEGQYQDLYNKYWNELVPATGEADTDEGNAIRAIARINHDVFNNGAGNIVNESMEIDDDGEWYTLYEIERWWEKFFSDIYDFTRLDTDRLKRKIIESVQFDHDNGLSEMLDDYIDHIVLKVDNQLVTK
Ga0181565_100186849	F032639	N/A	MLDKNKKLINEDGLYVGSELMWCVDDVLRILDEMHMTASKEDVERILIASFQDNHTLMQQINEAIGDTITYMIEEGQLKTEEL