Scaffold Ga0181565_10012602

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10012602
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6347
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F044418	Metagenome / Metatranscriptome	154	N
F067627	Metagenome / Metatranscriptome	125	Y
F090098	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1001260211	F044418	GAGG	MRIEERMIDYAQKWYAENGFDTEKKNGFDLYLRVNDNVFTEVSHCDIRQKAIMWLESELEGVKYN
Ga0181565_1001260212	F014724	AGGAG	MKEELYAIKVAIDGLSDEVLEHRRHANMEDLVKAVKEQNEILVTISYDLKDLVETQKFQNELTTALK
Ga0181565_1001260219	F090098	AGGAG	MNINPEFNPEEVPSAVKAMQVSMNWIWENFVEPRKDELDGNDGHMLAMVGAVMLNIANDAEAYHKIQSDKFAESPYSRN
Ga0181565_100126028	F067627	N/A	MIKTLLKVLSKQQFGFVTKDDLDLLKEEMPNLPLLIRCGRDRYIAQAQDAEARMRYVEEIGDYVRDVSIPARSLDDMATSPFVPLVVKQAIESLRA