Scaffold Ga0181565_10007066

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10007066
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8583
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003637	Metagenome / Metatranscriptome	476	Y
F020921	Metagenome / Metatranscriptome	221	Y
F072428	Metagenome / Metatranscriptome	121	Y
F085729	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_100070661	F003637	AGGA	MAKVIAEKVQEQVQVDAPKMVEIKHTRTMQDASGNDVEVVDYTDVKPVEDAISQCEAHKANLEAQLTECEAELADYIAIRDAE
Ga0181565_1000706616	F085729	AGGA	VWFSQLGFPHITLEFPYKRQSPLTKKVKTYENLEQVWEEIEMLVEKWQESQFSLGRNLYFHLPLFMNPRWIIDVEYQMILKEYNWIKDFNIPLASTLDEVNASKLDEFDVINSEIKSIQLYMGEKNGR
Ga0181565_100070662	F020921	GAG	MATPTVPTTNVGIYNHLRESTDCNQTTNLSLASLCDGATHGSITNTFGAAGGPAKDFDVIGGTNNPITTTPDSVNLYDDIIGVAPFNLANTIGGRYN
Ga0181565_100070667	F072428	AGGGGG	MDLAETIKRLKELSAMLQADTISDREKEFYLPEMFRLIDNLDIPELIGEFKNEYIS