Scaffold Ga0181565_10005483

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10005483
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9713
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042562	Metagenome	158	N
F073648	Metagenome / Metatranscriptome	120	N
F085574	Metagenome	111	N
F097491	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1000548312	F073648	AGG	MFNNLINKVKVYAFHFWYFQMRGVKATRYRKNAIVNNGYFISLTSGGNCGEGFIRISKGKKNYYYPNYYRNGQIRSNAYVLDVANLKHSTEQDAEIVYN
Ga0181565_1000548317	F097491	GAGG	MSSDEGIKMWREEIGQYYDEHFSEEEMEILYEIVRGNVDVDTLKEKLIDFFEDSDIPSLPFFDLKTDEGLLDRLDYDFGYVGGTGTRGGYRTH
Ga0181565_100054833	F042562	N/A	MPTYTFKDLKTGEEFDKVMSYEDMLKYKKKKDIEYVIKPFKVFRLNDMGGPEDSFREWCRQPETDIDTSKSKNFRNSKKEYLYSNAKDK
Ga0181565_100054839	F085574	N/A	MINLNKLSKTKNKYFENETLTYNFVNKLTKKANQFGYAVFYKVSPNNQNISYNLIEKITVPLK