Scaffold Ga0181565

Basic Information
Taxon OID	3300017818 Open in IMG/M
Scaffold ID	Ga0181565_10003596 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11918
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (38.24%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

11918

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (38.24%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F016795	Metagenome / Metatranscriptome	244	Y
F031064	Metagenome / Metatranscriptome	183	Y
F034927	Metagenome	173	Y
F044418	Metagenome / Metatranscriptome	154	N
F045676	Metagenome / Metatranscriptome	152	Y
F067627	Metagenome / Metatranscriptome	125	Y
F071123	Metagenome / Metatranscriptome	122	Y
F090098	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1000359611	F044418	GAGG	MRIEERMIDYAQKWYAENGFDTEKKHGFDLYLRVNDNVFTEVSHCDIRQKAIMWLESELEGVKYN
Ga0181565_1000359612	F014724	AGGAG	MKEELKAIKFAIDGLSDEILEHRRHANMEDLVKVMKNINDNLVSISFDLKDLVEAKKFQNELTTALR
Ga0181565_100035962	F071123	N/A	MNEGEISKYLDYWMDNDPNFSEILANKDYEVEGVEHYNHNGYPRSAISLNQNLVLLFPPYQTGFDYSSGAVN
Ga0181565_1000359629	F045676	N/A	MSEREPHPPLDCALAMSKARGNLNFLAKRIKEEWRETDTTAQAIQDAHNALVQAQKEYEKVLTLLNKSTNVNV
Ga0181565_1000359630	F016795	N/A	MTEELEQFMTEELGIIDRLGFEPLEGEELFLDVGNNVWNLDQILHAFNNQ
Ga0181565_1000359631	F031064	N/A	MIKIKQQFKKGDVLISRDNQILQYQGKFDHPELGVIAKVRIYRSDRVVGIRFEDVKLHPFFS
Ga0181565_100035964	F034927	AGG	MNINIFQLPEQWTDKEIEHLYDTNWNITLEQLSLLTNRTIEQLKELLMPN
Ga0181565_100035966	F067627	N/A	MINTLLKVLSKQQFGFVTKEDLDALEVEMPNLPLLIRCGRDRYIAQAQDTKARMDYVEETGDYVRDISIPARTLDGMSTSPFVPFAVKQAIESLRAF
Ga0181565_100035967	F090098	AGGAGG	MNINPEFNPEEVPSAVGAMQVSMQWIWQNFIEPRKHELDGDDADMLAMVGSVFLDIAKDAEAYQKAQSEKFIESPYSRN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181565_10003596

Overview

Ecosystem & Geography

Associated Families

Sequences