Scaffold Ga0181565_10003233

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10003233
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12488
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036486	Metagenome / Metatranscriptome	170	N
F068254	Metagenome / Metatranscriptome	125	N
F069731	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1000323315	F068254	AGCAG	MPKLKMQHTSKLFFKKYKYKAVVTTPQTSFIRYASRKDIERLFNAESREQWSGITSPLSYGYSKFSLGSLSDYKQKQHKRVWDNRFTLYKLFNWINENYDTKHHKIRNEGDKLAFFTNDKDLWENFCGTFKNQISEIIWPKNDRHERYFDENPNNIICQRLPYDKYRYKINLKGNVVKQQGFGDWIKNYKGELKASSSLIDGIKRGYYYSDGKFLYSTNSEMMLLLQLYLGEAIRNIQEYITEAELDEQH
Ga0181565_1000323319	F069731	AGGAG	MARNTKEIPIKDALNLAVQAYIKNGRYHKEDQYEYVETDEGPTERITVKGNKHLMRQAFERDEIGLDPKCNDMVEDIYTHYQGLIFKIMANNASDFANNVYKVISKETVGIRDLGYLAPLPSLYEAELQRIQFVEGIANSQWVGTIGEKCTVRATLHEARYIRSRDFHVYTFISEGDLITHFSQKAINQWPTVGVLREGEEYTITFKVKRHSTSSFYDCKDTVVNYLKVSD
Ga0181565_1000323321	F036486	AGGAG	MARTKQYVTYTREFTKGNVSSKIGVFVEPANSYMVDGAVNGGAIKFANLKMSRPTATKKLVDAGYDFNVRVLGTGSLQSSLALKESLIDLLSNTNKTVINNAA