Scaffold Ga0181565_10002327

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10002327
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14499
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024199	Metagenome	207	Y
F026123	Metagenome	199	Y
F030248	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1000232714	F024199	AGGA	LYFGTVLVQIPTFGLIKTALGAIYSREMEEKNNFGELAAENIKIGDIVAWSKWNSDNSDWIQHLGVVLEVKNTIFSDRMVCVTTVLPMKEPKIPVELFTFSLKLVSSADEKEV
Ga0181565_1000232715	F026123	AGCAGG	MAWDELEADRVEQVIRQITGKKIDKTKELVNPAMIKGTGVLYLWAPTKKTLLKVNRGIQVYVISYEMDEKDRILVYDGFNLLAIHPDDIEEIGFN
Ga0181565_100023276	F030248	AGGAG	MKLIIENFRRFLTEQNFISEIPLEQDDEGNIILYHVSSVEDIEELDPDIAARNLKNYTQQEYRSWDRPRVFFFTRLGQEDTGIGRIEGVPYRVRLRPNQLYPVMDDPAGLSSKQEQQNWMEANIPEFAEKMKTAEKCSVSERYNEWHICTKTEDSDGLYYTKERHAGDTLMVDNPRFHHLKPNTYEMVANLAEERYNSIGFIYPQSNQQDNQIVALWRKVPAEKLDKEFY