Scaffold Ga0181565

Basic Information
Taxon OID	3300017818 Open in IMG/M
Scaffold ID	Ga0181565_10000461 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30180
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

30180

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009725	Metagenome / Metatranscriptome	314	Y
F012180	Metagenome / Metatranscriptome	283	Y
F046081	Metagenome / Metatranscriptome	152	Y
F100097	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1000046110	F046081	GAGG	MFWCKGSKEFIQPDEIELETKLSFIDQKDLSEGSCAFVENITDERVVVYWFDKLDPEKLINTHELDGPMFINTAHPVTLKNLGDKSAVVSYTDLNTVIEHYKGI
Ga0181565_1000046141	F009725	AGGAG	MLLWERFKNACTSAGYARAASQLASQGHYEEAKNLMLNGMKETVERKKAIQRLERVKKAKWNYEPGDHYMKGHKVAFWKGHADA
Ga0181565_1000046145	F100097	N/A	MAKKDNGHYIGLDRDKKLPEGHKGGHYISGVDTEQGNHKDGKRWLKGKKRPDLDELEAGDPNNNRYHNKEDEI
Ga0181565_100004616	F012180	AGGA	MKINHTKTAFGGLFIVLIAFALLILTTKANAEDLTLEQRVSNLENKTSSYDIPEGFFINGEVEGRYDDKTYDSGWDSRGELQFGLSTNLKQEVLGIDWIGASGVYDSYYELDHTQDNTLVEKQIGFGNDVARWYIGETDAQRMGFAKTPKISAPLIFTETNYRIDHREKTVLAFGGWQYDNEFDFDSYRLKKEMPWGVALGYDNDGNVGYATGTVSLMGYADLSYMRISGPEETAKEDQEGWAIGGSLHRFNIPMLWGVEIWDDKNTGLASDDRIDYGVMYNINKATYVTAHRTENDDLGYDGNYYGIVHNIYNNYDPTKRPDKQDGLELGLYLHDKEQTSVYTGAHTDYGQQVIGSIRYKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181565_10000461

Overview

Ecosystem & Geography

Associated Families

Sequences