Scaffold Ga0188953_13227

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0188953_13227

Scaffold Ga0188953_13227

Overview

Basic Information
Taxon OID	3300017813 Open in IMG/M
Scaffold ID	Ga0188953_13227 Open in IMG/M
Source Dataset Name	Saline water viral communities from Saloum River inverse estuary, Senegal ? P2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	GATC-Biotech AG, Konstanz, Germany
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1655
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location
Location Name	Saloum River, Senegal
Coordinates	Lat. (^o)	14.0536	Long. (^o)	-16.2885	Alt. (m)		Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063375	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188953_132272	F063375	N/A	MTGVDLTHRQLSLIEAVGAHLQAVIAYGAVFIAGVIIGFESSDHPIIWPVTTSYTGKAVTEPYTQILEIGVGILAVCIMLIIILEWVVYLHDR

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