Scaffold Ga0188953_12309

Overview

Basic Information

• Taxon OID: 3300017813
• Scaffold ID: Ga0188953_12309
• Source Dataset Name: Saline water viral communities from Saloum River inverse estuary, Senegal ? P2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: GATC-Biotech AG, Konstanz, Germany
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2172
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location

• Location Name: Saloum River, Senegal
• Coordinates
  • Lat. (^o): 14.0536
  • Long. (^o): -16.2885
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065234	Metagenome / Metatranscriptome	128	N
F077970	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188953_123094	F077970	GGA	MSKCYSVLVMGTVERRVTVTGESLAEIEANACAEWTSLTGGHIGTAECIEADELEIDWENWDA
Ga0188953_123098	F065234	AGG	MRPSEKNSRSYEQCVEMCERIAAEHDWHGNPVEFKTWWTKADLYRKQRDADNGHTFRVTDGRLEKEYETLFGNPYGKAEMPRMEFQEFFNPERKTP